IL_9O3J_217

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3J_217 not in the Motif Atlas

Geometric match to IL_9DFE_048

Geometric discrepancy: 0.0474

The information below is about IL_9DFE_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9O3J|1|2A|A|1262
9O3J|1|2A|U|1263
9O3J|1|2A|G|1264
9O3J|1|2A|A|1265
9O3J|1|2A|G|1266
9O3J|1|2A|U|1267
9O3J|1|2A|A|1268
9O3J|1|2A|A|1269
*
9O3J|1|2A|U|2011
9O3J|1|2A|G|2012
9O3J|1|2A|A|2013
9O3J|1|2A|A|2014
9O3J|1|2A|A|2015
9O3J|1|2A|U|2016
9O3J|1|2A|U|2017

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22