IL_9O3J_334

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

9O3J|1|2a|5MC|1400, 9O3J|1|2a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3J_334 not in the Motif Atlas

Geometric match to IL_8CRE_466

Geometric discrepancy: 0.1031

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9O3J|1|2a|C|1399
9O3J|1|2a|5MC|1400
9O3J|1|2a|G|1401
*
9O3J|1|2a|C|1501
9O3J|1|2a|A|1502
9O3J|1|2a|A|1503
9O3J|1|2a|G|1504

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2v

MET-LYS-mRNA

Chain 2x

Transfer RNA; tRNA