IL_9O3K_066

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

9O3K|1|1A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3K_066 not in the Motif Atlas

Geometric match to IL_9DFE_067

Geometric discrepancy: 0.0671

The information below is about IL_9DFE_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9O3K|1|1A|A|1669
9O3K|1|1A|C|1670
9O3K|1|1A|U|1671
9O3K|1|1A|C|1672
9O3K|1|1A|U|1673
9O3K|1|1A|G|1674
*
9O3K|1|1A|C|1990
9O3K|1|1A|U|1991
9O3K|1|1A|G|1992
9O3K|1|1A|U|1993

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14