IL_9O3K_100

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

9O3K|1|1A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3K_100 not in the Motif Atlas

Geometric match to IL_9DFE_101

Geometric discrepancy: 0.0535

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9O3K|1|1A|U|2636
9O3K|1|1A|U|2637
9O3K|1|1A|G|2638
9O3K|1|1A|A|2639
9O3K|1|1A|G|2640
*
9O3K|1|1A|C|2774
9O3K|1|1A|A|2775
9O3K|1|1A|A|2776
9O3K|1|1A|G|2777
9O3K|1|1A|A|2778
9O3K|1|1A|U|2779
9O3K|1|1A|G|2780
9O3K|1|1A|A|2781
9O3K|1|1A|G|2782

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13