IL_9O3K_143

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3K_143 not in the Motif Atlas

Geometric match to IL_5J7L_361

Geometric discrepancy: 0.0632

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9O3K|1|1a|G|673
9O3K|1|1a|G|674
9O3K|1|1a|A|675
9O3K|1|1a|A|676
9O3K|1|1a|U|677
*
9O3K|1|1a|G|713
9O3K|1|1a|G|714
9O3K|1|1a|A|715
9O3K|1|1a|A|716
9O3K|1|1a|C|717

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1f

30S ribosomal protein S6

Chain 1k

30S ribosomal protein S11

Chain 1r

30S ribosomal protein S18