IL_9O3K_273

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

9O3K|1|2A|U|2689, 9O3K|1|2A|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3K_273 not in the Motif Atlas

Geometric match to IL_9DFE_104

Geometric discrepancy: 0.0751

The information below is about IL_9DFE_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9O3K|1|2A|U|2687
9O3K|1|2A|U|2688
9O3K|1|2A|U|2689
9O3K|1|2A|C|2690
9O3K|1|2A|C|2691
*
9O3K|1|2A|G|2718
9O3K|1|2A|G|2719
9O3K|1|2A|U|2720
9O3K|1|2A|A|2721
9O3K|1|2A|G|2722

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19