IL_9O3L_257

3D structure

PDB id

9O3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, deacylated A-site tRNAphe, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAphe at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

9O3L|1|2A|G|2165, 9O3L|1|2A|G|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3L_257 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3858

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9O3L|1|2A|G|2124
9O3L|1|2A|G|2125
9O3L|1|2A|A|2126
9O3L|1|2A|G|2127
*
9O3L|1|2A|C|2161
9O3L|1|2A|G|2162
9O3L|1|2A|C|2163
9O3L|1|2A|C|2164
9O3L|1|2A|G|2165
9O3L|1|2A|G|2166
9O3L|1|2A|U|2167
9O3L|1|2A|G|2168
9O3L|1|2A|A|2169
9O3L|1|2A|A|2170
9O3L|1|2A|A|2171
9O3L|1|2A|U|2172
9O3L|1|2A|A|2173
9O3L|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA