IL_9O3L_258

3D structure

PDB id

9O3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, deacylated A-site tRNAphe, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAphe at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

9O3L|1|2A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3L_258 not in the Motif Atlas

Geometric match to IL_5Y7M_008

Geometric discrepancy: 0.3673

The information below is about IL_5Y7M_008

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9O3L|1|2A|C|2129
9O3L|1|2A|U|2130
9O3L|1|2A|G|2131
9O3L|1|2A|U|2132
9O3L|1|2A|G|2133
9O3L|1|2A|A|2134
9O3L|1|2A|A|2135
9O3L|1|2A|C|2136
*
9O3L|1|2A|G|2155
9O3L|1|2A|G|2156
9O3L|1|2A|G|2157
9O3L|1|2A|A|2158
9O3L|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains