IL_9O3V_070

3D structure

PDB id

9O3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3V_070 not in the Motif Atlas

Geometric match to IL_8GLP_003

Geometric discrepancy: 0.1367

The information below is about IL_8GLP_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9O3V|1|L5|G|1758
9O3V|1|L5|G|1759
9O3V|1|L5|G|1760
*
9O3V|1|L5|C|1772
9O3V|1|L5|U|1773
9O3V|1|L5|C|1774

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16