IL_9O3V_200

3D structure

PDB id

9O3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAC*GUAA

Length

7 nucleotides

Bulged bases

9O3V|1|S2|A|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3V_200 not in the Motif Atlas

Geometric match to IL_5UNE_006

Geometric discrepancy: 0.2866

The information below is about IL_5UNE_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_27134.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9O3V|1|S2|U|530
9O3V|1|S2|A|531
9O3V|1|S2|C|532
*
9O3V|1|S2|G|552
9O3V|1|S2|U|553
9O3V|1|S2|A|554
9O3V|1|S2|A|555

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS4

Chain Se

FAU ubiquitin-like and ribosomal protein S30