IL_9O3V_215

3D structure

PDB id

9O3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3V_215 not in the Motif Atlas

Geometric match to IL_8GLP_234

Geometric discrepancy: 0.1072

The information below is about IL_8GLP_234

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9O3V|1|S2|C|877
9O3V|1|S2|G|878
9O3V|1|S2|C|879
*
9O3V|1|S2|G|907
9O3V|1|S2|A|908
9O3V|1|S2|G|909

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain SH

Small ribosomal subunit protein eS7