IL_9O3W_005
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3W_005 not in the Motif Atlas
- Homologous match to IL_8GLP_005
- Geometric discrepancy: 0.0245
- The information below is about IL_8GLP_005
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.3
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9O3W|1|L5|C|30
9O3W|1|L5|U|31
9O3W|1|L5|G|32
9O3W|1|L5|A|33
9O3W|1|L5|A|34
9O3W|1|L5|U|35
9O3W|1|L5|U|36
9O3W|1|L5|U|37
*
9O3W|1|L5|A|44
9O3W|1|L5|U|45
9O3W|1|L5|U|46
9O3W|1|L5|A|47
9O3W|1|L5|G|48
9O3W|1|L5|U|49
9O3W|1|L5|C|50
9O3W|1|L5|A|51
9O3W|1|L5|G|52
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- Large ribosomal subunit protein eL15
- Chain La
- 60S ribosomal protein L27a
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Lo
- Large ribosomal subunit protein eL42
Coloring options: