IL_9O3W_009

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AU*ACAUGU

Length

8 nucleotides

Bulged bases

9O3W|1|L5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_009 not in the Motif Atlas

Homologous match to IL_8GLP_008

Geometric discrepancy: 0.043

The information below is about IL_8GLP_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

8

Unit IDs

9O3W|1|L5|A|121
9O3W|1|L5|U|122
*
9O3W|1|L5|A|147
9O3W|1|L5|C|148
9O3W|1|L5|A|149
9O3W|1|L5|U|150
9O3W|1|L5|G|151
9O3W|1|L5|U|152

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

Large ribosomal subunit protein eL8

Chain LN

Large ribosomal subunit protein eL15