IL_9O3W_074

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_074 not in the Motif Atlas

Homologous match to IL_8GLP_076

Geometric discrepancy: 0.0308

The information below is about IL_8GLP_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9O3W|1|L5|C|1911
9O3W|1|L5|G|1912
9O3W|1|L5|C|1913
9O3W|1|L5|C|1914
9O3W|1|L5|C|1915
9O3W|1|L5|G|1916
9O3W|1|L5|A|1917
9O3W|1|L5|U|1918
*
9O3W|1|L5|G|2064
9O3W|1|L5|G|2065

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LO

Large ribosomal subunit protein uL13

Chain LS

Large ribosomal subunit protein eL20

Chain Lf

Large ribosomal subunit protein eL33