IL_9O3W_086

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_086 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0306

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9O3W|1|L5|G|2358
9O3W|1|L5|U|2359
9O3W|1|L5|A|2360
9O3W|1|L5|G|2361
9O3W|1|L5|U|2362
9O3W|1|L5|A2M|2363
9O3W|1|L5|OMG|2364
*
9O3W|1|L5|C|3858
9O3W|1|L5|G|3859
9O3W|1|L5|A|3860
9O3W|1|L5|A|3861
9O3W|1|L5|A|3862
9O3W|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LP

Large ribosomal subunit protein uL22