IL_9O3W_102

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_102 not in the Motif Atlas

Geometric match to IL_8GLP_305

Geometric discrepancy: 0.0222

The information below is about IL_8GLP_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.3

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

9O3W|1|L5|G|2847
9O3W|1|L5|G|2848
9O3W|1|L5|A|2849
9O3W|1|L5|A|2850
9O3W|1|L5|G|2851
9O3W|1|L5|U|2852
9O3W|1|L5|C|2853
9O3W|1|L5|G|2854
9O3W|1|L5|G|2855
*
9O3W|1|L5|C|3837
9O3W|1|L5|U|3838
9O3W|1|L5|G|3839
9O3W|1|L5|U|3840
9O3W|1|L5|OMC|3841

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

Large ribosomal subunit protein uL14

Chain LW

Large ribosomal subunit protein eL24