IL_9O3W_113

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_113 not in the Motif Atlas

Homologous match to IL_9H3G_097

Geometric discrepancy: 0.1356

The information below is about IL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.3

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9O3W|1|L5|PSU|3715
9O3W|1|L5|C|3716
9O3W|1|L5|A|3717
9O3W|1|L5|A2M|3718
9O3W|1|L5|A|3719
9O3W|1|L5|G|3720
9O3W|1|L5|U|3721
*
9O3W|1|L5|A|3732
9O3W|1|L5|A|3733
9O3W|1|L5|PSU|3734
9O3W|1|L5|G|3735
9O3W|1|L5|A|3736
9O3W|1|L5|A|3737
9O3W|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

Large ribosomal subunit protein eL36

Chain Lo

Large ribosomal subunit protein eL42