IL_9O3W_142

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9O3W|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_142 not in the Motif Atlas

Homologous match to IL_8GLP_158

Geometric discrepancy: 0.0353

The information below is about IL_8GLP_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46211.1

Basepair signature

cWW-tWW-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9O3W|1|L5|C|4582
9O3W|1|L5|C|4583
9O3W|1|L5|A|4584
9O3W|1|L5|U|4585
*
9O3W|1|L5|A|4717
9O3W|1|L5|G|4718
9O3W|1|L5|G|4719
9O3W|1|L5|C|4720
9O3W|1|L5|G|4721

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

Large ribosomal subunit protein uL13