Motif IL_46211.1 Version IL_46211.1 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5V1K_003 | 5V1K | 0.0000 | 0 | B+A | RNA (12-mer) | C | 203 | G | 204 | A | 205 | A | 206 | * | 5BU | 107||A | 8RJ | 108||A | A | 109 | G | 110 | cWW | tSH | tWW | cWW |
| 2 | IL_8GLP_158 | 8GLP | 0.7612 | 1 | L5 | LSU rRNA | A | 4717 | G | 4718 | G | 4719 | G | 4721 | * | C | 4582 | C | 4583 | A | 4584 | U | 4585 | cWW | tSH | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAA*(5BU)(8RJ)AG | 1 |
| AGGCG*CCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*(8RJ)A | 1 |
| GGC*CA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tWW-tHS-cWW
- Heat map statistics
- Min 0.76 | Avg 0.38 | Max 0.76
Coloring options: