IL_9O3W_200
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GAG*CGAGG(A2M)UC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3W_200 not in the Motif Atlas
- Homologous match to IL_9PN5_168
- Geometric discrepancy: 0.1059
- The information below is about IL_9PN5_168
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02511.3
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9O3W|1|S2|G|563
9O3W|1|S2|A|564
9O3W|1|S2|G|565
*
9O3W|1|S2|C|585
9O3W|1|S2|G|586
9O3W|1|S2|A|587
9O3W|1|S2|G|588
9O3W|1|S2|G|589
9O3W|1|S2|A2M|590
9O3W|1|S2|U|591
9O3W|1|S2|C|592
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain Se
- FAU ubiquitin-like and ribosomal protein S30
Coloring options: