IL_9O3W_202

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|A|599
9O3W|1|S2|G|600
9O3W|1|S2|OMG|601
9O3W|1|S2|G|602
9O3W|1|S2|C|603
9O3W|1|S2|A|604
9O3W|1|S2|A|605
9O3W|1|S2|G|606
*
9O3W|1|S2|C|636
9O3W|1|S2|U|637

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

Small ribosomal subunit protein uS5

Chain SJ

Small ribosomal subunit protein uS4

Chain Se

FAU ubiquitin-like and ribosomal protein S30