IL_9O3W_204

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

9O3W|1|S2|A|628, 9O3W|1|S2|U|630, 9O3W|1|S2|U|631

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|G|611
9O3W|1|S2|U|612
9O3W|1|S2|G|613
9O3W|1|S2|C|614
9O3W|1|S2|C|615
9O3W|1|S2|A|616
9O3W|1|S2|G|617
*
9O3W|1|S2|C|624
9O3W|1|S2|G|625
9O3W|1|S2|G|626
9O3W|1|S2|OMU|627
9O3W|1|S2|A|628
9O3W|1|S2|A|629
9O3W|1|S2|U|630
9O3W|1|S2|U|631
9O3W|1|S2|C|632

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SX

Small ribosomal subunit protein uS12

Chain Se

FAU ubiquitin-like and ribosomal protein S30