IL_9O3W_216

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9O3W|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_216 not in the Motif Atlas

Homologous match to IL_9PN5_183

Geometric discrepancy: 0.0404

The information below is about IL_9PN5_183

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9O3W|1|S2|G|925
9O3W|1|S2|A|926
9O3W|1|S2|C|927
*
9O3W|1|S2|G|1014
9O3W|1|S2|U|1015
9O3W|1|S2|U|1016
9O3W|1|S2|U|1017

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Lc

Large ribosomal subunit protein eL30

Chain SN

Small ribosomal subunit protein uS15

Chain Sb

Small ribosomal subunit protein eS27