IL_9O3W_219
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3W_219 not in the Motif Atlas
- Homologous match to IL_9PN5_186
- Geometric discrepancy: 0.0531
- The information below is about IL_9PN5_186
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9O3W|1|S2|G|942
9O3W|1|S2|U|943
9O3W|1|S2|A|944
9O3W|1|S2|U|945
*
9O3W|1|S2|A|981
9O3W|1|S2|G|982
9O3W|1|S2|A|983
9O3W|1|S2|C|984
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain SB
- Small ribosomal subunit protein eS1
- Chain SO
- Small ribosomal subunit protein uS11
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