IL_9O3W_220

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9O3W|1|S2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|G|952
9O3W|1|S2|C|953
9O3W|1|S2|U|954
9O3W|1|S2|A|955
9O3W|1|S2|G|956
*
9O3W|1|S2|C|967
9O3W|1|S2|U|968
9O3W|1|S2|U|969
9O3W|1|S2|G|970
9O3W|1|S2|G|971
9O3W|1|S2|A|972
9O3W|1|S2|C|973
9O3W|1|S2|C|974

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SB

Small ribosomal subunit protein eS1

Chain SO

Small ribosomal subunit protein uS11