IL_9O3W_226

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_226 not in the Motif Atlas

Geometric match to IL_8GLP_246

Geometric discrepancy: 0.0973

The information below is about IL_8GLP_246

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9O3W|1|S2|G|1108
9O3W|1|S2|C|1109
9O3W|1|S2|G|1110
*
9O3W|1|S2|C|1123
9O3W|1|S2|C|1124

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SB

Small ribosomal subunit protein eS1

Chain SR

Small ribosomal subunit protein eS17

Chain Sb

Small ribosomal subunit protein eS27