IL_9O3W_235

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3W_235 not in the Motif Atlas

Homologous match to IL_9H3G_217

Geometric discrepancy: 0.1875

The information below is about IL_9H3G_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75737.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9O3W|1|S2|A|1291
9O3W|1|S2|C|1292
9O3W|1|S2|A|1293
*
9O3W|1|S2|U|1306
9O3W|1|S2|U|1307
9O3W|1|S2|U|1308

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein uS19

Chain Sd

Small ribosomal subunit protein uS14

Chain Sf

Ubiquitin-ribosomal protein eS31 fusion protein