IL_9O3Y_008

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

9O3Y|1|L5|G|119, 9O3Y|1|L5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3Y|1|L5|C|118
9O3Y|1|L5|G|119
9O3Y|1|L5|A|120
9O3Y|1|L5|A|121
9O3Y|1|L5|U|122
*
9O3Y|1|L5|A|147
9O3Y|1|L5|C|148
9O3Y|1|L5|A|149
9O3Y|1|L5|U|150
9O3Y|1|L5|G|151
9O3Y|1|L5|U|152
9O3Y|1|L5|G|153

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

Large ribosomal subunit protein eL8

Chain LN

Large ribosomal subunit protein eL15

Chain Lh

Large ribosomal subunit protein uL29