IL_9O3Y_080
3D structure
- PDB id
- 9O3Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 9O3Y|1|L5|A|1960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3Y_080 not in the Motif Atlas
- Homologous match to IL_8GLP_082
- Geometric discrepancy: 0.2348
- The information below is about IL_8GLP_082
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.4
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
9O3Y|1|L5|U|1957
9O3Y|1|L5|A|1958
9O3Y|1|L5|U|1959
9O3Y|1|L5|A|1960
9O3Y|1|L5|G|1961
9O3Y|1|L5|A|1962
9O3Y|1|L5|C|1963
9O3Y|1|L5|A|1964
9O3Y|1|L5|G|1965
*
9O3Y|1|L5|C|2022
9O3Y|1|L5|C|2023
9O3Y|1|L5|G|2024
9O3Y|1|L5|A|2025
9O3Y|1|L5|A|2026
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LH
- Large ribosomal subunit protein uL6
- Chain LS
- Large ribosomal subunit protein eL20
- Chain Lm
- Ubiquitin-ribosomal protein eL40 fusion protein
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