IL_9O3Y_080

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9O3Y|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3Y|1|L5|U|1957
9O3Y|1|L5|A|1958
9O3Y|1|L5|U|1959
9O3Y|1|L5|A|1960
9O3Y|1|L5|G|1961
9O3Y|1|L5|A|1962
9O3Y|1|L5|C|1963
9O3Y|1|L5|A|1964
9O3Y|1|L5|G|1965
*
9O3Y|1|L5|C|2022
9O3Y|1|L5|C|2023
9O3Y|1|L5|G|2024
9O3Y|1|L5|A|2025
9O3Y|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LS

Large ribosomal subunit protein eL20

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein