IL_9O3Y_190

3D structure

PDB id

9O3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9O3Y|1|S2|U|361, 9O3Y|1|S2|C|399, 9O3Y|1|S2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3Y|1|S2|U|359
9O3Y|1|S2|A|360
9O3Y|1|S2|U|361
9O3Y|1|S2|C|362
9O3Y|1|S2|A|363
9O3Y|1|S2|A|364
*
9O3Y|1|S2|U|396
9O3Y|1|S2|G|397
9O3Y|1|S2|A|398
9O3Y|1|S2|C|399
9O3Y|1|S2|C|400
9O3Y|1|S2|A|401
9O3Y|1|S2|C|402
9O3Y|1|S2|G|403

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

Small ribosomal subunit protein eS8

Chain SL

Small ribosomal subunit protein uS17

Chain SX

Small ribosomal subunit protein uS12