IL_9O3Y_205
3D structure
- PDB id
- 9O3Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9O3Y|1|S2|A|628, 9O3Y|1|S2|U|630, 9O3Y|1|S2|U|631
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O3Y_205 not in the Motif Atlas
- Homologous match to IL_9H3G_187
- Geometric discrepancy: 0.1013
- The information below is about IL_9H3G_187
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9O3Y|1|S2|G|611
9O3Y|1|S2|U|612
9O3Y|1|S2|G|613
9O3Y|1|S2|C|614
9O3Y|1|S2|C|615
9O3Y|1|S2|A|616
9O3Y|1|S2|G|617
*
9O3Y|1|S2|C|624
9O3Y|1|S2|G|625
9O3Y|1|S2|G|626
9O3Y|1|S2|OMU|627
9O3Y|1|S2|A|628
9O3Y|1|S2|A|629
9O3Y|1|S2|U|630
9O3Y|1|S2|U|631
9O3Y|1|S2|C|632
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SX
- Small ribosomal subunit protein uS12
- Chain Se
- FAU ubiquitin-like and ribosomal protein S30
Coloring options: