IL_9OFV_005
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_005 not in the Motif Atlas
- Geometric match to IL_8P9A_235
- Geometric discrepancy: 0.0681
- The information below is about IL_8P9A_235
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_53348.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9OFV|1|f|C|82
9OFV|1|f|U|83
9OFV|1|f|U|84
9OFV|1|f|A|85
9OFV|1|f|G|86
9OFV|1|f|U|87
9OFV|1|f|A|88
9OFV|1|f|A|89
*
9OFV|1|f|U|97
9OFV|1|f|G|98
9OFV|1|f|A|99
9OFV|1|f|A|100
9OFV|1|f|G|101
9OFV|1|f|C|102
9OFV|1|f|G|103
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 4
- 60S ribosomal protein L18-A
- Chain N
- 60S ribosomal protein L28
- Chain t
- 60S ribosomal protein L13-A
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