IL_9OFV_010

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_010 not in the Motif Atlas

Homologous match to IL_8GLP_012

Geometric discrepancy: 0.5676

The information below is about IL_8GLP_012

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9OFV|1|f|U|177
9OFV|1|f|U|178
*
9OFV|1|f|A|238
9OFV|1|f|G|239
9OFV|1|f|U|240
9OFV|1|f|G|241

Current chains

Chain f

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L35-A

Chain W

60S ribosomal protein L37-A

Chain t

60S ribosomal protein L13-A