IL_9OFV_012

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

9OFV|1|f|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_012 not in the Motif Atlas

Geometric match to IL_8CRE_014

Geometric discrepancy: 0.0924

The information below is about IL_8CRE_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9OFV|1|f|G|337
9OFV|1|f|A|338
9OFV|1|f|C|339
*
9OFV|1|i|G|25
9OFV|1|i|U|26

Current chains

Chain f

25S rRNA

Chain i

5.8S rRNA

Nearby chains

Chain L

60S ribosomal protein L26-A

Chain l

Large ribosomal subunit protein uL4A