IL_9OFV_021

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_021 not in the Motif Atlas

Geometric match to IL_8P9A_251

Geometric discrepancy: 0.08

The information below is about IL_8P9A_251

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9OFV|1|f|G|725
9OFV|1|f|G|726
9OFV|1|f|G|727
9OFV|1|f|G|728
*
9OFV|1|f|U|741
9OFV|1|f|G|742
9OFV|1|f|C|743
9OFV|1|f|A|744
9OFV|1|f|C|745

Current chains

Chain f

25S rRNA

Nearby chains

Chain 4

60S ribosomal protein L18-A

Chain O

Large ribosomal subunit protein eL29