IL_9OFV_024

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_024 not in the Motif Atlas

Geometric match to IL_8P9A_254

Geometric discrepancy: 0.0987

The information below is about IL_8P9A_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9OFV|1|f|C|758
9OFV|1|f|U|759
9OFV|1|f|G|760
9OFV|1|f|A|761
9OFV|1|f|U|762
9OFV|1|f|G|763
*
9OFV|1|f|C|768
9OFV|1|f|G|769
9OFV|1|f|G|770
9OFV|1|f|A|771
9OFV|1|f|U|772
9OFV|1|f|G|773

Current chains

Chain f

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L28

Chain b

60S ribosomal protein L42-A

Chain t

60S ribosomal protein L13-A