IL_9OFV_030

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

9OFV|1|f|U|874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_030 not in the Motif Atlas

Geometric match to IL_8P9A_260

Geometric discrepancy: 0.0534

The information below is about IL_8P9A_260

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9OFV|1|f|C|873
9OFV|1|f|U|874
9OFV|1|f|G|875
*
9OFV|1|f|C|886
9OFV|1|f|G|887

Current chains

Chain f

25S rRNA

Nearby chains

Chain W

60S ribosomal protein L37-A

Chain k

Large ribosomal subunit protein uL3