IL_9OFV_035

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

9OFV|1|f|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_035 not in the Motif Atlas

Geometric match to IL_8CRE_040

Geometric discrepancy: 0.0797

The information below is about IL_8CRE_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9OFV|1|f|A|983
9OFV|1|f|G|984
9OFV|1|f|U|985
*
9OFV|1|f|A|1099
9OFV|1|f|U|1100

Current chains

Chain f

25S rRNA

Nearby chains

Chain 4

60S ribosomal protein L18-A

Chain 7

60S ribosomal protein L21-A

Chain O

Large ribosomal subunit protein eL29

Chain o

60S ribosomal protein L7-A