IL_9OFV_040

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_040 not in the Motif Atlas

Geometric match to IL_8P9A_270

Geometric discrepancy: 0.0736

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9OFV|1|f|A|1009
9OFV|1|f|G|1010
9OFV|1|f|A|1011
*
9OFV|1|f|U|1039
9OFV|1|f|A|1040
9OFV|1|f|U|1041

Current chains

Chain f

25S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein uL18

Chain r

Large ribosomal subunit protein uL16