IL_9OFV_044

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_044 not in the Motif Atlas

Geometric match to IL_8CRE_049

Geometric discrepancy: 0.0613

The information below is about IL_8CRE_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9OFV|1|f|A|1120
9OFV|1|f|U|1121
9OFV|1|f|U|1122
*
9OFV|1|f|A|1136
9OFV|1|f|C|1137
9OFV|1|f|U|1138

Current chains

Chain f

25S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein eL29

Chain h

5S ribosomal RNA; 5S rRNA

Chain o

60S ribosomal protein L7-A