IL_9OFV_050
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9OFV|1|f|C|1196, 9OFV|1|f|A|1302, 9OFV|1|f|U|1305, 9OFV|1|f|G|1306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_050 not in the Motif Atlas
- Geometric match to IL_8P9A_280
- Geometric discrepancy: 0.0655
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9OFV|1|f|G|1194
9OFV|1|f|A|1195
9OFV|1|f|C|1196
9OFV|1|f|A|1197
9OFV|1|f|C|1198
9OFV|1|f|C|1199
9OFV|1|f|A|1200
9OFV|1|f|C|1201
9OFV|1|f|A|1202
9OFV|1|f|A|1203
9OFV|1|f|A|1204
9OFV|1|f|A|1205
*
9OFV|1|f|U|1299
9OFV|1|f|G|1300
9OFV|1|f|A|1301
9OFV|1|f|A|1302
9OFV|1|f|A|1303
9OFV|1|f|A|1304
9OFV|1|f|U|1305
9OFV|1|f|G|1306
9OFV|1|f|G|1307
9OFV|1|f|A|1308
9OFV|1|f|U|1309
9OFV|1|f|G|1310
9OFV|1|f|G|1311
9OFV|1|f|C|1312
9OFV|1|f|G|1313
9OFV|1|f|C|1314
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain S
- 60S ribosomal protein L33-A
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain a0
- 60S ribosomal protein L16-A
- Chain h
- 5S ribosomal RNA; 5S rRNA
- Chain k
- Large ribosomal subunit protein uL3
- Chain o
- 60S ribosomal protein L7-A
- Chain r
- Large ribosomal subunit protein uL16
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