IL_9OFV_058

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

9OFV|1|f|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_058 not in the Motif Atlas

Geometric match to IL_8P9A_288

Geometric discrepancy: 0.0746

The information below is about IL_8P9A_288

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9OFV|1|f|U|1398
9OFV|1|f|A|1399
9OFV|1|f|G|1400
*
9OFV|1|f|C|1411
9OFV|1|f|G|1412

Current chains

Chain f

25S rRNA

Nearby chains

Chain R

Large ribosomal subunit protein eL32

Chain i

5.8S ribosomal RNA; 5.8S rRNA

Chain n

Large ribosomal subunit protein eL6B