IL_9OFV_059
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_059 not in the Motif Atlas
- Geometric match to IL_8CRE_065
- Geometric discrepancy: 0.0588
- The information below is about IL_8CRE_065
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9OFV|1|f|G|1444
9OFV|1|f|U|1445
9OFV|1|f|A|1446
9OFV|1|f|G|1447
9OFV|1|f|U|1448
9OFV|1|f|A|1449
9OFV|1|f|G|1450
*
9OFV|1|f|C|2354
9OFV|1|f|G|2355
9OFV|1|f|A|2356
9OFV|1|f|A|2357
9OFV|1|f|A|2358
9OFV|1|f|C|2359
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L17-A
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l
- Large ribosomal subunit protein uL4A
Coloring options: