IL_9OFV_066

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_066 not in the Motif Atlas

Geometric match to IL_8CRE_073

Geometric discrepancy: 0.0822

The information below is about IL_8CRE_073

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9OFV|1|f|G|1661
9OFV|1|f|G|1662
9OFV|1|f|C|1663
*
9OFV|1|f|G|1786
9OFV|1|f|A|1787
9OFV|1|f|C|1788

Current chains

Chain f

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L19-A

Chain T

60S ribosomal protein L34-A

Chain c

60S ribosomal protein L43-A