IL_9OFV_070

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_070 not in the Motif Atlas

Geometric match to IL_8P9A_300

Geometric discrepancy: 0.0965

The information below is about IL_8P9A_300

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9OFV|1|f|U|1702
9OFV|1|f|U|1703
9OFV|1|f|A|1704
9OFV|1|f|U|1705
9OFV|1|f|C|1706
9OFV|1|f|A|1707
*
9OFV|1|f|U|1737
9OFV|1|f|C|1738
9OFV|1|f|U|1739
9OFV|1|f|U|1740
9OFV|1|f|A|1741
9OFV|1|f|U|1742
9OFV|1|f|G|1743

Current chains

Chain f

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L34-A