IL_9OFV_077

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9OFV|1|f|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_077 not in the Motif Atlas

Geometric match to IL_8CRE_084

Geometric discrepancy: 0.0546

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9OFV|1|f|C|1918
9OFV|1|f|G|1919
9OFV|1|f|U|1920
9OFV|1|f|A|1921
9OFV|1|f|A|1922
9OFV|1|f|C|1923
*
9OFV|1|f|G|1928
9OFV|1|f|G|1929
9OFV|1|f|A|1930
9OFV|1|f|U|1931
9OFV|1|f|A|1932
9OFV|1|f|A|1933
9OFV|1|f|G|1934

Current chains

Chain f

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L19-A

Chain c

60S ribosomal protein L43-A