IL_9OFV_081
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 9OFV|1|f|U|2159, 9OFV|1|f|U|2175, 9OFV|1|f|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9OFV_081 not in the Motif Atlas
- Geometric match to IL_8P9A_311
- Geometric discrepancy: 0.053
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9OFV|1|f|C|2156
9OFV|1|f|G|2157
9OFV|1|f|A|2158
9OFV|1|f|U|2159
9OFV|1|f|G|2160
9OFV|1|f|G|2161
*
9OFV|1|f|U|2173
9OFV|1|f|G|2174
9OFV|1|f|U|2175
9OFV|1|f|U|2176
9OFV|1|f|G|2177
9OFV|1|f|A|2178
9OFV|1|f|C|2179
9OFV|1|f|G|2180
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a
- Ribosome quality control complex subunit 2
- Chain c
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
Coloring options: