IL_9OFV_082

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

9OFV|1|f|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_082 not in the Motif Atlas

Geometric match to IL_8P9A_312

Geometric discrepancy: 0.0787

The information below is about IL_8P9A_312

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

9OFV|1|f|C|2196
9OFV|1|f|C|2197
9OFV|1|f|A|2198
9OFV|1|f|G|2199
*
9OFV|1|f|C|2245
9OFV|1|f|G|2246

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2

Chain j

60S ribosomal protein L2-A