IL_9OFV_088

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9OFV|1|f|A|2281, 9OFV|1|f|C|2287, 9OFV|1|f|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_088 not in the Motif Atlas

Geometric match to IL_8CRE_095

Geometric discrepancy: 0.0589

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9OFV|1|f|C|2277
9OFV|1|f|C|2278
9OFV|1|f|A|2279
9OFV|1|f|A|2280
9OFV|1|f|A|2281
9OFV|1|f|U|2282
9OFV|1|f|G|2283
9OFV|1|f|C|2284
9OFV|1|f|C|2285
9OFV|1|f|U|2286
9OFV|1|f|C|2287
9OFV|1|f|G|2288
*
9OFV|1|f|C|2304
9OFV|1|f|G|2305
9OFV|1|f|C|2306
9OFV|1|f|G|2307

Current chains

Chain f

25S rRNA

Nearby chains

Chain x

Transfer RNA; tRNA