IL_9OFV_090

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9OFV|1|f|A|2397, 9OFV|1|f|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9OFV_090 not in the Motif Atlas

Geometric match to IL_8CRE_097

Geometric discrepancy: 0.0747

The information below is about IL_8CRE_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

9OFV|1|f|G|2396
9OFV|1|f|A|2397
9OFV|1|f|A|2398
*
9OFV|1|f|U|2981
9OFV|1|f|A|2982
9OFV|1|f|C|2983
9OFV|1|f|C|2984

Current chains

Chain f

25S rRNA

Nearby chains

Chain 3

60S ribosomal protein L17-A

Chain k

Large ribosomal subunit protein uL3